Dept. of Systems Biology and Bioinformatics is a part of the University of Rostock, Germany Universität Rostock



Schmitz U, Wolkenhauer O, (eds.)
Systems Medicine

Springer (2016), Series Title Methods in Molecular Biology
ISBN: 978-1-4939-3282-5 (Print) 978-1-4939-3283-2 (Online)

Schmitz U, Wolkenhauer O, Vera J (eds.)
MicroRNA Cancer Regulation - Advanced Concepts, Bioinformatics and Systems Biology Tools

Series: Advances in Experimental Medicine and Biology, Vol. 774
Springer 2012. ISBN: 978-94-007-5589-5

Wolkenhauer O
Nich lang schnacken - Ein plattdeutsches Konversationshandbuch

Quickborn-Verlag 2012.
ISBN-10: 3876513774
ISBN-13: 9783876513775

Dubitzky W, Wolkenhauer O, Yokata H, Cho K-H (eds.)
Encyclopedia of Systems Biology

Springer 2013. ISBN-13: 9781441998620

Ullah M, Wolkenhauer O
Stochastic Approaches for Systems Biology

Springer 2011. ISBN-10: 1461404770


Wolkenhauer O, Wellstead P, Cho KH (eds.)
Systems Biology

Portland Press (Essays in Biochemistry Series), 2008
ISBN-10: 1855781700

Wolkenhauer O
Data Engineering: Fuzzy Mathematics in System Theory and Data Analysis

John Wiley and Sons 2001. ISBN 0471 416568

Wolkenhauer O
Possibility Theory with Applications to Data Analysis

Research Studies Press 1998. ISBN 086380 229 X

Chapters in Books

Khan FM, Sadeghi M, Gupta SK, Wolkenhauer O
A Network-Based Integrative Workflow to Unravel Mechanisms Underlying Disease Progression.
Springer Protocols

Theile T, Wolkenhauer O
Mehrebenensysteme in der Systembiologie

Wissenschaft und Kunst der Modellierung. De Gruyter 2015. Link

Olaf Wolkenhauer
From Microscopes to Macroscopes: Advancing Biomedical Research Through Systems Approaches

Chapter in Philosophy of Systems Biology (Springer)
Part of the series History, Philosophy and Theory of the Life Sciences pp 257-265

Marin-Sanguino A, Gupta SK, Voit EO, Vera J
Biochemical pathway modeling tools for drug target detection in Cancer and other complex diseases

In Michael Johnson editor: Methods in Enzymology, Vol. 487,
Burlington: Academic Press, 2010, pp 319-370.

Eberhardt M, Lai X, Tomar N, Gupta SK, Schmech B, Steinkasserer A, Schuler G, Vera J
Third-Kind Encounters in Biomedicine: Immunology Meets Mathematics and Informatics to Become Quantitative and Predictive

In: Systems Medicine, Methods in Molecular Biology (2016) 1386: 135-179.
Published by Springer. ISBN 978-1-4939-3282-5.

S. Strunz, O. Wolkenhauer, A. de la Fuente
Network-Assisted Disease Classification and Biomarker Discovery

In Springer (2016), Systems Medicine, pp 353-374
Print ISBN 978-1-4939-3282-5, Online ISBN 978-1-4939-3283-2

R. Amirkhah, A. Farazmand, O. Wolkenhauer, U. Schmitz
RNA Systems Biology for Cancer: From Diagnosis to Therapy

In Springer (2016), Systems Medicine, pp 305-330
Print ISBN 978-1-4939-3282-5, Online ISBN 978-1-4939-3283-2

T.Theile, O.Wolkenhauer (2015)
Mehrebenensysteme in der Biomedizin

In Wissenschaft und Kunst der Modellierung, B.Thalheim, I.Nissen (eds), ISBN 978-1-5015-1040-3, 455-474, De Gruyter 2015

J.Vera, S.Gupta, O.Wolkenhauer, G.Schuler (2015)
Envisioning the Application of Systems Biology in Cancer

In Cancer Immunology, N.Rezaei (ed.), ISBN 978-3-662-44006-3, 429-449, Springer 2015

T.Breidenmoser, O.Wolkenhauer (2015)
Explanation and Organizing Principles in Systems Biology

In Explanation in Biology, P-A Braillard, C Malaterre (eds), ISBN 978-94-017-9822-8, 249-264, Springer 2015

Wolkenhauer, O
Modelle und ihre Befragbarkeit als Grundlage biomedizinischer Erkenntnis

 Erwägen-Wissen-Ethik. Vol 26 Nr 3 (2015), 420-422

Vera J, Wolkenhauer O, Schmitz U (2014)
Cancer Systems Biology: Current Achievements in – Omics Data Analysis, Network Reconstruction and Mathematical Modelling

In: eLS. John Wiley & Sons Ltd, Chichester. [doi: 10.1002/9780470015902.a0025237]

D Waltemath, R Henkel, F Winter, O Wolkenhauer
Reproducibility of model-based results in systems biology

In: Systems Biology: Integrative Biology and Simulation Tools 1, pp 301-320. Prokop A, Csukas B (eds) Springer (2013)
DOI: 10.1007/978-94-007-6803-1_10

Wolkenhauer O, Hofmeyr J (2013)
Interdisciplinarity as both necessity and hurdle for progress in the life sciences

in: Andersen H, Dieks D, Gonzales WJ, Uebel T, Wheeler G, eds.
New Challenges to Philosophy of Science - The Philosophy of Science in a European perspective 4. Springer Verlag, 2013, 225-235

Nikolow S, Ullah M, Nenov M, Gonzales JV, Raasch P, Wolkenhauer O
Modeling Colorectal Cancer: A Stability Analysis Approach

in: Medical Advancements in Aging and Regenerative Technologies; Daskalaki A
Clinical Tools and Applications: 53-75
IGI Global 2013

Pauleweit S, Nebe BJ, Wolkenhauer O
Modelling Molecular Processes by Individual-Based Simulations Applied to Actin Polymerisation

in: Simulation and Modeling Methodologies, Technologies and Applications; Nuno P, Janusz K, Joaquim F (eds.); series: Advances in Intelligent Systems and Computing. ISBN: 978-3-642-34335-3

Millat T, Janssen H, Bahl H, Fischer R-J, Wolkenhauer O
The pH-induced metabolic shift from acidogenesis to solventogenesis in Clostridium acetobutylicum - From experiments to models

in: Proceedings of the 5th Internation ESCEC Symposium on "Experimental Standard Conditions of Enzyme Characterization", Kettner, C (ed.); Logos Verlag Berlin 2013. ISBN: 978-3-8325-3367-0

Schmitz U, Vera J
Computational microRNA biology

in: Encyclopedia of Systems Biology; Dubitzky W, Wolkenhauer O, Yokata H, Cho K-H (eds.); Springer 2012. ISBN-13: 9781441998620

Millat T, Haus S, Wolkenhauer O
Mathematical modelling of the pH-induced metabolic shift in Clostridium acetobutylicum

in: Systems Biology of Clostridium acetobutylicum, Dürre P (ed.), Imperial College Press, 2014, 103-130. ISBN 978-1-78326-440-7

Nikolov S, Vera J, Wolkenhauer O
Bifurcation Analysis of a Model Accounting for the 14-3-3s Signalling Compartmentalisation

in: Quality Assurance in Healthcare Service Delivery, Nursing, and Personalized Medicine: Technologies and Processes. Lazakidou A, Daskalaki A (eds.);  Medical Information Science Reference 2011. ISBN-10: 161350120X

Gupta S, Schmitz U
Bioinformatics Analysis of High-Throughput Experiments

in: Recent Trends in Biotechnology. Volume 2; Singh M P, Agrawal A, Sharma B (eds.); Nova Science Publishers 2011. ISBN: 9781617617973

Millat T, Wolkenhauer O, Fischer, RJ, Bahl, H
Modeling of Cellular Processes: Methods, Data, and Requirements

in: Data Mining in Proteomics;  Hamacher M, Eisenacher M, Stephan C (eds.); Springer 2011. ISBN: 9781607019864 ... More

Lai X, Wolkenhauer O, Vera J
Modelling miRNA regulation in cancer signalling systems: miR-34a regulation of the p53/Sirt1 signalling module

in: Computational Modelling of Signalling Networks; Liu X, Betterton M (eds.); Humana 2012. ISBN: 9781617798230

Rateitschak K, Jaster R, Wolkenhauer O
Interferon-g stimulated STAT1 signalling: from experimental data to a predictive mathematical model

in: Proceedings of the 4th International Beilstein Symposium on Experimental Standard Conditions of Enzyme Characterizations; Hicks MG , Kettner C (eds.); Logos Berlin 2010. ISBN: 9783832526067

Frey S, Wolkenhauer O, Millat T
Quantifying properties of cell signaling cascades

in: Control Theory and Systems Biology; Iglesias P A, Ingalls B (eds.); MIT press 2009. ISBN: 9780262013345

Wolkenhauer O, Wellstead P
Methods in In Silico Biology: Modeling Feedback and Dynamics

in: Systems Biology for Drug Discovery and Development; Young D, Michelson S (eds); Wiley 2011. ISBN: 9780470261231

Wolkenhauer O, Muir A
The Complexity of Cell-Biological Systems

in: Philosophy of Complex Systems Vol. 10; 345-385; Hooker CA (ed.); series: Handbook of the Philosophy of Science; North-Holland 2011. ISBN: 9780444520760

Assmus HE, Boldt S, Wolkenhauer O
Reverse Engineering of Biological Networks

in: Methods in Bioengineering: Systems Analysis of Biological Networks; Jayaraman A, Hahn J (eds.); Artech House 2009. ISBN: 9781596934061

Gupta SK, Smita S, Rahman Q
Enriching biotechnology with recent bioinformatics tools and protocols

in: Recent trends in Biotechnology; Singh MP, Agrawal A, Sharma B (eds.); Nova Science Publishers Inc. 2011. ISBN: 9781608761487

Ericsson A, Mojzita D, Schmidt H, Hohmann S
Case study in systematic modelling: Thiamine uptake in Yeast S. cerevisiae, book chapter, Essays

In: Biochemistry - Systems Biology, Portland Press, accepted (2008)

Wellstead P, Sreenath S, Cho KH, Wolkenhauer O
Systems and Control Theory for Medical Systems Biology

in: Handbook of Research on Systems Biology Applications in Medicine; A. Daskalak (ed.); IGI Publishers; November 2008. ISBN: 1605660760

Vera J, Wolkenhauer O
A system biology approach to understand functional activity of cell communication systems

in: Methods in Nano Cell Biology; Ramaswamy B (ed.); Elsevier 2008. ISBN 13: 9781597492706 ... More

Wolkenhauer O, Mesarovic M, Wellstead P
A plea for more theory in molecular biology

In: Systems Biology - Applications and Perspectives; Bringmann P, Butcher EC, Parry P, Weiss B (eds.); Springer 2007. ISBN: 9783540313380

Vera J, Bachmann J, Pfeifer AC, Hormiga JA, Torres Darias NV, Klingmüller U, Wolkenhauer O
A power-law model to describe the dynamics of the JAK2-STAT5 signalling pathway

in: Understanding and Exploiting Systems Biology in Bioprocesses and Biomedicine; Cánovas M, Iborra JL, Manjón A (eds.); Fundacion Cajamurcia 2006. ISBN: 9788461111350

Vera J, Torres NV, Curto R, Cascante M
Identification of enzyme targets in metabolic diseases by modelling and optimisation. The case of hyperuricemia in humans

in: Understanding and Exploiting Systems Biology in Bioprocesses and Biomedicine; Cánovas M, Iborra JL, Manjón A (eds.); Fundacion Cajamurcia 2006. ISBN: 9788461111350

Rateitschak K, Kschischo M
Bifurcation threshold in the MAPK cascade is independent of the Hill coefficient

in: Irreversible Prozesse und Selbstorganisation; Pöschel ET, Malchow H, Schimansky-Geier L (eds.); Logos Verlag Berlin 2006. ISBN: 9783832513504

Wolkenhauer O, Ullah M
All Models are Wrong

in: Systems Biology - Philosophical Foundations; Boogard F, Bruggeman F, Hofmeyr J, Westerhoff H (eds.); Elsevier 2006. ISBN 10: 0444520856

Wolkenhauer O, Kolch W, Cho KH
Mathematical Systems Biology: Genomic Cybernetics

in: Computations in Cells and Tissues: Perspectives and Tools of Thought; Paton R (ed.); Springer 2004. ISBN: 3540003584

Cho HH, Shin SY, Kim HW, Wolkenhauer O, McFerran B, Kolch W
Mathematical Modelling of the Influence of RKIP on the ERK Signalling Pathway

in: Computational Methods in Systems Biology; Priami C (ed.); Springer 2003. ISBN: 3540006052

Moeller-Levet C S, Klawonn F, Cho K H, Wolkenhauer O
Fuzzy Clustering of Short Time-Series and Unevenly Distributed Sampling Points

In: Advances in Intelligent Data Analysis V; Berthold MR, Lenz HJ, Bradley E, Kruse R, Borgelt C (eds.); Springer 2003. ISBN: 3540408134

Wolkenhauer O
Information Fusion in Genomics: Qualitative vs Quantitative

in: Data Fusion and Perception; Della Riccia G, Lenz HJ, Kruse R (eds.); Springer 2001. ISBN: 3211836837

Nunez-Garcia J, Wolkenhauer O
Random-Sets: Theory and Applications

in: Granular Computing: An Emerging Paradigm; Pedrycz W (ed.); Springer 2001. ISBN: 3790813877

Wolkenhauer O
Qualitative Uncertainty Models using Random Set Theory

in: Advances in Intelligent Data Analysis; Liu X, Cohen P, Berthold M (eds.); Springer LNCS 1280, 1997. ISBN: 3540633464