SBI – Department of Systems Biology and Bioinformatics
Faculty of Computer Science and Electrical Engineering
University of Rostock
Ulmenstrasse 69 | 18057 Rostock
+49 381 498-7571
My research takes interest on the Systems Biology Graphical Notation (SBGN), a standard for visualising biological pathway, developed by a community of scientists. I support the SBGN community by working on the libSBGN development and on the improvement of SBGN-ED functionalities to support SBGN. Since January 2016, I am also responsible for the SBGN symbol of the month (accessible here) which provides every month a short description and examples of a SBGN symbol taken from the specifications.
March 2017 - present
Norwegian University of Science and Technology
Trondheim/Norway September 2015 - February 2017
Department of Systems Biology and Bioinformatics at the University of Rostock
February 2015 - August 2015
Project: "Standards in Systems Biology: new tools to improve knowledge representation"
Internship at the European Institute of Systems Biology and Medicine
June 2014 - August 2014
Project: "Inference of ecological models from genetic and environmental data in R"
Internship at the Laboratoire Evolution, GÃ©nomes, SpÃ©ciation (LEGS, IRD, CNRS)
2013 - 2015
Master student in Bionformatics and Biostatistics at the University Paris-Sud
2011 - 2013
Bachelor student in Living Sciences at the University Pierre et Marie Curie
Medical studies at the University Pierre et Marie Curie
Evolution of computational models in BioModels Database and the Physiome Model Repository
Scharm M, Gebhardt T, Touré V, Bagnacani A, Salehzadeh-Yazdi A, Wolkenhauer O, Waltemath D
BMC Systems Biology 12:53 (2018)
Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation
Touré V, Le Novère N, Waltemath D, Wolkenhauer O
Plos Computational Biology
STON: exploring biological pathways using the SBGN standard and graph databases
Touré V, Mazein A, Waltemath D, Balaur I, Saqi M, Henkel R, Pellet J, Auffray C
Open Access article in BMC Bioinformatics 2016, 17:494
Toward community standards and software for whole-cell modeling
Waltemath D, Karr JT, Bergmann FT, Chelliah V ... Scharm M et al.
Open Access article in IEEE Transactions on Biomedical Engineering 63:10, pp. 2007-14 (2016)