Advanced Significance Analysis of microarray data based on weighted resampling: A comparative study and application to gene deletions in Mycobacterium bovis

This page contains material related to the paper:

Kutalik Z, Inwald J, Gordon SV, Hewinson RG, Butcher P, Hinds J, Cho KH, Wolkenhauer O
Advanced Significance Analysis of microarray data based on weighted resampling: A comparative study and application to gene deletions in Mycobacterium bovis
Bioinformatics, Vol. 20, No. 3, pp. 357-363, 2004

R-files
r-normalisation.txt
normalisation of gene deletion data
r-algorithms.txt
algorithms for significance analysis

Data Sets
Note that these are normalised data. The four columns in the files refer to replicates:
X.txt
"M.bovis" data
Y.txt
"M.tuberculosis" data

Extra Text Material/Appendices
The text includes: Material and Methods, Detailed table of detected RD deletions, scatter plot of log-intensities, proofs for variance stablisation, Wilk's lambda score.
appendices.pdf